Scientists at two major California
research institutions have leveled charges that the state stem cell
agency's $40 million genomics round is tainted with unfair and
non-scientific considerations along with factual errors, manipulation
of scores and apparent preferential treatment.
The statements were contained in
letters (see here and below) to the governing board of the state agency from researchers at UC San Francisco and the Scripps Research
Institute in La Jolla, who were competing in the round. The
allegations involve the agency's closed-door grant review process in
which a seven-member consortium led by Stanford University appears the likely winner.
CIRM President Alan Trounson has
recommended approval of Stanford's $33 million bid. It was the only
application that he supported out of four recommended for funding by CIRM's prestigious grant reviewers. Trounson also specifically
recommended not funding the three other applications, including
those from UCSF and Scripps. The board's longstanding practice has been to fund all awards recommended by reviewers.
Pui-Yan Kwok UCSF photo |
Pui-Yan Kwok, leader of the UCSF bid,
and Jeanne Loring, who heads Scripps effort, have taken their complaints about the
process to the agency's 29-member board which meets Wednesday in Berkeley to act on the applications to create one
or two stem cell genomics centers in California.
In an e-mail to the California Stem
Cell Report today, Kwok said his team has examined the summaries of the grant reviews posted on the CIRM Web site. He said,
“We were surprised to see that the genomic center scores of the top two applications were based on the reviewers removing from consideration the poorest performing center-initiated projects. The fact that the reviewers could propose removal of individual center-initiated projects was never mentioned in the RFA.
“Even more appalling is that this was applied only to the two applications (that) ended up with the highest scores. The end result is that two centers' scores were artificially inflated to 88 and 82, respectively. Despite this uneven application of the review process, two other applications received Tier 1 (recommended for funding) scores. This appearance of preferential treatment makes the process suspect."
In his letter late yesterday to the board, Kwok said
such actions are “inconsistent” with practices of the National
Institutes of Health, whose standards are the norm for virtually all
scientific grant reviews. The stem cell agency's review practices are
patterned after those of the NIH.
Jeanne Loring Scripps photo |
Loring said, however, the only “serious
concern” expressed by reviewers in the CIRM review summary was the
“lack of material commitment” from the applicants.
Loring said,
“This comment...suggests that other applications did offer to provide extra money for their (genomic) centers. Since there was no written request for additional funds, and we were not informed that contributions would be expected or considered as a measure of scientific merit, we were put at a significant disadvantage.”
(Reviewers praised the Stanford
application for its “very substantial matching funds from multiple
participating institutions.”)
Loring also stressed the benefits of
the partnership with Illumina, a world leader in genomics.
The firm recently announced a device that can sequence a human genome
for $1,000, which sent its stock jumping this month. She said that
Illumina's sequencer is the only one approved by the FDA for clinical
diagnostics. She said that partnering with Illumina will give
researchers access to tools that can have an “immediate impact”
on their clinical studies on cancer, heart disease and inherited
diseases.
(On Jan. 27, the agency released a statement defending its procedures. An item dealing with that can be found here.)
(On Jan. 27, the agency released a statement defending its procedures. An item dealing with that can be found here.)
The stem cell agency has long come
under fire from the biotech community because of the tiny percentage
of its funding that goes to industry. Loring noted that last week
that the only body charged with overseeing the finances of the
agency, the Citizens Financial and Oversight Committee, stressed that
it was necessary to form partnerships with industry.
In addition to Illumina, Loring is working with researcher Nicholas Schork, who this month joined Craig
Venter's institute in the San Diego area. Venter is internationally
famed for his genomics work. She said that the linkage with the
institute will provide her project with “even broader access to
genomic expertise.” The Venter Institute is involved with the
Stanford application as is UC Santa Cruz.
Illumina also sent a letter to the CIRM
written by Mostafa Ronaghi, the company's senior vice president and
co-project director on the Loring application. Ronaghi said that
Illumina makes affordable research tools and will help with planning
experiments and analysis. Also involved in the Scripps-Illumina bid
is co-investigator Jian-Bing Fan of Illumina.
Kowk said Ophir Klein of UCSF and
Steven Brenner of UC Berkeley are co-directors of their effort.
Other researchers involved are Michael McManus, Joe Costello, Susan
Fisher, Neil Risch and Arnold Kriegstein, all of UCSF; Lin He and Dan
Rokhsar, both of UC Berkeley, and Amander Clark of UCLA.
The California Stem Cell Report has
queried Stanford concerning a list of its participants.
The names of the other applicants in
genomics round are not known. The stem cell agency will not release
the names of winning applicants until after the board acts and never releases the names of rejected applicants. The agency also
withholds the names of applicants from the board prior to its action on them unless the
applicants “self-identify,” usually in the form of letters to the
board, which are a public record. Board members also do not have
access to the actual application nor does the public. Some board
members have complained in the past about not having enough
information to act when applicants appear directly before the board.
Directors have final legal say on all
applications. They do not, however, have to act on any of them. They
can increase funding beyond the $40 million originally budgeted
for this round or lower it. They can also send the applications back
to reviewers for reconsideration or approve them with conditions.
Here is a copy of Kwok's letter, which
the stem cell agency has not yet posted.